PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008236124.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 619aa    MW: 69420.7 Da    PI: 4.92
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008236124.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.62e-12355396854
                     HHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
             HLH   8 rErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                     +Er+RR+++N+++ +Lr+l+P+ +      K++Ka+iL  A++Y+k+L
  XP_008236124.1 355 AERKRRKKLNERLYRLRSLVPNiS------KMDKAAILGDAIDYVKDL 396
                     7*********************66......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142153.4E-188156IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.501347396IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.06E-14349401No hitNo description
SuperFamilySSF474593.4E-18350412IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.0E-16353402IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.3E-10355396IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-16355410IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048734.22E-4501563No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0048657Biological Processanther wall tapetum cell differentiation
GO:0005634Cellular Componentnucleus
GO:0000978Molecular FunctionRNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 619 aa     Download sequence    Send to blast
MIIIMQNLTE RLRPLVGLKG WDYCVIWKLS ENQRFIELMD CCCSGADENT QTNGGQELLF  60
PVYPVLPCRD TMQHSRTNSC DVLAQLPSSL SLDSGIYAHP LISNQPIWLN SSSNRDSSAM  120
AERDGTRVLV PSAGGLIELF VSKDVSEDQQ VIDYITAQCN ISKEQDNLIG AGCNTSFPVN  180
INDMSTEIQP HAFPGNENEG NDHLNSNHFQ QPPVVSPSVD HDSNVPYDIS VDRIRLCSAS  240
PMNFLQRVTY NSENCMKNGN SNLYHEQRSH ESLGEMGLQA DADAPNMHNS MHVMEAMENM  300
EQQGVEDQDS VKHDAQGGRT ADNSGSDCSD QIDDEDDTKY RRRTGKGPQS KNLFAERKRR  360
KKLNERLYRL RSLVPNISKM DKAAILGDAI DYVKDLLRQV KELQDELEQH SNDEGPNKKT  420
SANICGNHNN FQPEILNQNG TSITNKQEND DKPPDGFHVG RLGDIGNISK QQQDSEGTND  480
RGQQMEPQVG VTQLDGNEFF VTVFCEHKPG GFVRLMEALD TLGLEVTNAN VTSFRSLVSN  540
VFKVEKKDSE VVQADDVRDS LLEITRNPSS KVWPEMAKAK ASANGSGLDH FHHDDQHHYQ  600
QHNLHNYHAS SYLQHLYNY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1340361RRRTGKGPQSKNLFAERKRRKK
2355362ERKRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008236124.10.0PREDICTED: transcription factor ABORTED MICROSPORES-like
TrEMBLM5VX360.0M5VX36_PRUPE; Uncharacterized protein
STRINGPOPTR_0009s13860.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42253247
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.11e-118bHLH family protein